rs6368173 SNP Detail

Summary

• ID
  rs6368173
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126862316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGCTGC TCCCACCACT
  CAACTATGGC CGCTCCCTTA AAGGGACCAT GACGAAGGGA TGATGTCAGA ATGAAAGATC
  TTAATGGAAG GACTATCTGG TGAAATGTCA GTGAGGGGTT CACATCACCA CCCTACACCT
  GACTACAGAG ATATTGCCAA AAGGAGAGAA CCCTGATGAG CCAAAGTTCT CAGTGACCCT
  W
  TGAACATGAA GAATCCCAAC CAAGAAGAAA ACAAGACTGT TATCTGAAGG AGAAACCAAC
  AGCTTGTCAA GTAAAGGGCG TCGACTCTCA AGGAACAACT TCCAACCTTA AAACCAGATC
  CACTGGTAGT GTTGAAGGCA GAACCAATAA CTGAAGACAA TTTCCTCAAT ACCTGCTTGC
  CATTAGAATA CTAAAATGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8774289	WI_WGS_4_124332496	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6368173					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126862316 () rs orientation: forward

Symbol	Name	Function Class
4933424C08Rik	RIKEN cDNA 4933424C08 gene	within coordinates
Cpgi14832	CpG island 14832	113 bp distal
Gm68857	predicted gene, 68857	within coordinates
Rr398497	regulatory region 398497	157 bp downstream
Rr599780	regulatory region 599780	399 bp distal
Rr599781	regulatory region 599781	313 bp distal
Rr599782	regulatory region 599782	within coordinates
Tssr39026	transcription start site region 39026	87 bp downstream
Tssr43405	transcription start site region 43405	524 bp upstream
Tssr43406	transcription start site region 43406	409 bp upstream
Tssr43407	transcription start site region 43407	369 bp upstream
Tssr43408	transcription start site region 43408	346 bp upstream
Tssr43409	transcription start site region 43409	325 bp upstream
Tssr43410	transcription start site region 43410	287 bp upstream
Tssr43411	transcription start site region 43411	320 bp downstream
Zmym4	zinc finger, MYM-type 4	388 bp upstream