rs6369183 SNP Detail

Summary

• ID
  rs6369183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133499919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATCCACA TAGGGTGACC
  ATGACCCCAA ATCCAAGGGT AAGGGATTCA GCCCTTTCTA AGAAAGAACA CTTTCTTAAC
  ATATGCAATA CCCTCAGACA TGTCCCCAAA CTTCAAGAAA AACAAAAGTA AATGAATGCT
  TCGCCTAAAG CCACACTAAC GTAGAATTTG AACCTAGGCA GGGCACTGGG GTCTTGATGG
  Y
  ACTCACACAT AAAAGTCATG CTATTTTTTG GGAGTCAATT AGAAATCTGT GTTTTCATTT
  ACATAATAAA CAACTGCAGA TTTGTATATA GATATTCACC ATGATTATTT CTGGATGATG
  AAATAAAAAG GCTTAATTTC CATCATATCA TTTTTACCAC TAACTTGTTT GCAGTGACCA
  TGTGTTAGTT TTCTAACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8775300	WI_WGS_X_113984994	WI	MOUSE	f	SNP						T		C
ss38462409	NES09782367	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T		T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6369183					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462409	NES09782367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133499919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	1906 bp proximal
Gla	galactosidase, alpha	within coordinates
Rr406169	regulatory region 406169	1813 bp upstream
Tssr164150	transcription start site region 164150	1083 bp downstream
Tssr164151	transcription start site region 164151	1134 bp downstream
Tssr164152	transcription start site region 164152	1758 bp downstream
Tssr164153	transcription start site region 164153	1806 bp downstream
Tssr164154	transcription start site region 164154	1971 bp downstream