rs6369539 SNP Detail

Summary

• ID
  rs6369539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:80313105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAT GCCATATCAA AGTTTTCTAG
  R
  AAGTATTGCT TATATGTGTT TTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ
ss8775656	WI_WGS_16_81128183	WI	MOUSE	f	SNP						G	A
ss60242649	NES15750371	PERLEGEN	MM_PANEL2	f	SNP		A	G	G	G				G
ss148438164	ENSMUSSNP6459810	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ
rs6369539					SNP	A	A	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60242649	NES15750371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:80313105 () rs orientation: forward

Symbol	Name	Function Class
D16Mit203	DNA Segment, Chr 16, Massachusetts Institute of Technology 203	802 bp proximal