rs6371126 SNP Detail

Summary

• ID
  rs6371126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100979925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGCCATT AGCTGGAGGA
  GTGGCTGCTC TTTCTCATTG AGCTTTAGGG AGCCCTAGCC CAGGGCAGAA ATACCCAGGA
  GTCTAAGTAA AGAGAAGAGA ATGGCTGTCT CTGTAACAAA GCCACTGCAG AGCCATTCAC
  CTCAGTTCTC CCAGGCAGAC ACTCTCAACA ACAAAGAAGC CACTTCCTCC AGCAGGGGCA
  Y
  GGAGACAAAC ACCACCCATG CTTGCCCTTG CTGGCCACAC TGCTGCAACC CATCCGGCTT
  CCTTATAGCT GGGAGCTCAA GGACACTTGT CTGAGCCACA CATCTACATG GGGCAGAATG
  CCCAGCACAC CACACACTTC CTGAGTGCAG GAAGGATTAA GCAGAGAAGC TAAATGGCAT
  TCCTCAAGCT ACTTACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8777251	WI_WGS_3_101174506	WI	MOUSE	f	SNP	T	C
ss320850823	CHEV_3_100876532	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6371126					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100979925 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581952	regulatory region 581952			987 bp distal