rs6371486 SNP Detail

Summary

• ID
  rs6371486
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67729652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTTTTA ATGAATCATT
  GTTTGTTCTA TAGATTAAAT TATTGAATTA ACGAATTCTT TTCCTTCTGG CTTTGAACTC
  TGGAATCTTT TCTTTTTCTT AGCTTATCAA TCTTGAAAGA ACTTATAGTA CAATATTTGG
  CAGGTGTGAT GAACACAGAT GTCTCTGTCT TGTCCCTACT CTTTGTTTTA GACTTTTATC
  W
  GTATATGATA TTACTTCTGG GAGTTTCTTT ACTTTGTAAT CTCTGTTGAG TGTTTTTTCT
  CTCTCTCTTT TATTCTTCCT TCACATTTTA CATCCTAACT GCAGTTCCCC CTCCTTCCAC
  TTTTCCCAGT CCTCTCTCCA GCTCCCCTCT GCCCCAGATC CACTCCTCCC TTTTCCCTTC
  AAATAACAGC AAGCTTCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8777612	WI_WGS_2_68664528	WI	MOUSE	f	SNP	A	T
ss320328236	CHEV_2_67737365	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6371486					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67729652 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	within coordinates
Gm37964	predicted gene, 37964	within coordinates