rs6371746 SNP Detail

Summary

• ID
  rs6371746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100980093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAAAGAA GCCACTTCCT
  CCAGCAGGGG CATGGAGACA AACACCACCC ATGCTTGCCC TTGCTGGCCA CACTGCTGCA
  ACCCATCCGG CTTCCTTATA GCTGGGAGCT CAAGGACACT TGTCTGAGCC ACACATCTAC
  ATGGGGCAGA ATGCCCAGCA CACCACACAC TTCCTGAGTG CAGGAAGGAT TAAGCAGAGA
  R
  GCTAAATGGC ATTCCTCAAG CTACTTACTC ACCTAGCCAG GTCACGCTTA CACCAGACGG
  GGCAGACATG GCCTCTGCCA CCTTGTGCCA GCTCCTGTTG TGTCCAGGAG CCCAGAGGGC
  CACAAGGCAA AGATAGTAGC CCGAGTTTTC TTTGCTAACA TCTCGCACCA GTAGATGGTA
  AGAGCGGGTA TCCACGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8777873	WI_WGS_3_101174674	WI	MOUSE	f	SNP							A	G
ss46810946	NES10725738	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A			A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6371746					SNP	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810946	NES10725738	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100980093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581952	regulatory region 581952			1155 bp distal