rs6372479 SNP Detail

Summary

• ID
  rs6372479
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128178006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC CGGGCAGGCG CAGACCAAAG
  M
  GATCTATACC TCCGGAGCAC ACCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8778607	WI_WGS_6_129122108	WI	MOUSE	f	SNP								C	A
ss45949260	mCV24158481	ABI	CRAMUS_MOUSE	f	SNP		C	A					C		A
ss51863565	NES14892199	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A			A	A	A		A	A	A	A		A
ss133637992	ENSMUSSNP1679703	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
ss321944117	CHEV_6_128151061	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6372479					SNP	C	C	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863565	NES14892199	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128178006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	within coordinates
Gm4691	predicted gene 4691	1107 bp downstream
Gm10010	predicted gene 10010	353 bp upstream
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	1136 bp downstream
Rr399953	regulatory region 399953	235 bp downstream
Rr639207	regulatory region 639207	729 bp distal
Rr639208	regulatory region 639208	472 bp distal
Rr639209	regulatory region 639209	325 bp distal
Rr639210	regulatory region 639210	within coordinates
Rr639211	regulatory region 639211	453 bp proximal
Tssr63410	transcription start site region 63410	473 bp upstream
Tssr63411	transcription start site region 63411	468 bp upstream
Tssr63412	transcription start site region 63412	451 bp upstream
Tssr63413	transcription start site region 63413	408 bp upstream
Tssr63414	transcription start site region 63414	393 bp upstream