rs6372505 SNP Detail

Summary

• ID
  rs6372505
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128178020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA CCAAAGCGAT CTATACCTCC
  S
  GAGCACACCA CATTCCCACC CACCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8778633	WI_WGS_6_129122122	WI	MOUSE	f	SNP		G	C
ss133637995	ENSMUSSNP3538093	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss321944118	CHEV_6_128151075	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6372505					SNP	C	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128178020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	within coordinates
Gm4691	predicted gene 4691	1093 bp downstream
Gm10010	predicted gene 10010	367 bp upstream
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	1122 bp downstream
Rr399953	regulatory region 399953	249 bp downstream
Rr639207	regulatory region 639207	743 bp distal
Rr639208	regulatory region 639208	486 bp distal
Rr639209	regulatory region 639209	339 bp distal
Rr639210	regulatory region 639210	within coordinates
Rr639211	regulatory region 639211	439 bp proximal
Tssr63410	transcription start site region 63410	487 bp upstream
Tssr63411	transcription start site region 63411	482 bp upstream
Tssr63412	transcription start site region 63412	465 bp upstream
Tssr63413	transcription start site region 63413	422 bp upstream
Tssr63414	transcription start site region 63414	407 bp upstream