rs6372598 SNP Detail

Summary

• ID
  rs6372598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126774367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCACATGTA CCTTACATAG AAGGCACTAT CTGGGAGTGA
  AAGGAAAGTA TATAGATATT CATATGGCTA TAGAGAGAAA TGTATGTGAG CGCAGTCAAC
  W
  AAAGAGCAGG CCAGAACGCT AACACCTGGA ACCCTGTTCA CACCGGCCCC TCCATCCGCC
  TTTTTCTAGG CAAAAGGCAG CAGTAAGATT GGGCTACAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8778726	WI_WGS_2_127912979	WI	MOUSE	f	SNP								A		T
ss37630923	NES08999276	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	T		T		T	A	A		T		A	A	T		T
ss45286944	mCV22628448	ABI	CRAMUS_MOUSE	f	SNP		A	T								T
ss147514357	ENSMUSSNP1511123	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T								T					T
ss320498570	CHEV_2_126758183	CHEVERUD	SCREENING_POP	f	SNP														A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6372598					SNP	A	A	T	A	T	A	T	A	T	T	T	A	A	A	T	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630923	NES08999276	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126774367 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			320 bp proximal
Gm75308	predicted gene, 75308			246 bp upstream
Rr564422	regulatory region 564422			within coordinates
Rr564423	regulatory region 564423			608 bp proximal
Rr564424	regulatory region 564424			641 bp proximal
Rr564425	regulatory region 564425			778 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			541 bp upstream
Tssr26085	transcription start site region 26085			546 bp downstream
Tssr26086	transcription start site region 26086			675 bp downstream
Tssr26087	transcription start site region 26087			706 bp downstream
Tssr26088	transcription start site region 26088			768 bp downstream
Tssr26089	transcription start site region 26089			782 bp downstream
Tssr26090	transcription start site region 26090			1420 bp downstream