rs6373152 SNP Detail

Summary

• ID
  rs6373152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185018616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCCTGTCTAT TCATTATTGT GAACTTATGT ATATTAGTGA AATAAATTAA
  Y
  GCTTCGTGTT ATTTCCTCCA CTGTTCATAC CCGTAGGAAC ACAGAGATTT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8779284	WI_WGS_1_186396799	WI	MOUSE	f	SNP								C		T
ss46730017	NES10647361	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		T		C	C	T		T	C	T	C		C
ss146426551	ENSMUSSNP4263213	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320174462	CHEV_1_187110298	CHEVERUD	SCREENING_POP	f	SNP														T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6373152					SNP	T	T	C	T	C	T	C	C	T	T	C	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730017	NES10647361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185018616 () rs orientation: forward

Symbol	Name	Function Class
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	223 bp downstream
Rab3gap2	RAB3 GTPase activating protein subunit 2	within coordinates
Rr425360	regulatory region 425360	877 bp distal