rs6373338 SNP Detail

Summary

• ID
  rs6373338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57662453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGTAGC ACAGTTAAGT
  GCTTATAGAG AAGTTCACTG GTGTCTTCTT TAAGTGTCCC TAGCCTGTTA AGTCCCTTAA
  CTCATAAATG CAAGGCTTGG GCTACTTCAG AACACAAGCC AGGCAGGGTA GAGCCTGAAG
  TCCAAGGGCT CTTTATAGAA AGAACAACTG TCAAACCCCA AGAGTACTGT GTGACTAGTA
  Y
  CAAATTCGAG GACACTAGGC AGCTGGAACT AGAGAATGCC ACCCACTGAG TGATACCTGT
  CCACTCTTTG CAGATACTCA CAACTTATTT TCCTTGTCTT TCTCCTTGAT TTTCTTGAGA
  ACATTAATTT CTAGACGAGC AGCTTCCCGA TACTTGCCCA CATTACGGAT GATCTTCAGG
  GCAACCTGTG ACTTCCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8779470	WI_WGS_9_58291012	WI	MOUSE	f	SNP							C		T
ss50711938	NES14261475	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6373338					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50711938	NES14261475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57662453 () rs orientation: forward

Symbol	Name	Function Class
Clk3	CDC-like kinase 3	within coordinates
Rr195918	regulatory region 195918	1853 bp distal
Rr204298	regulatory region 204298	1895 bp distal
Tssr89819	transcription start site region 89819	1118 bp downstream