rs6374034 SNP Detail

Summary

• ID
  rs6374034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75412402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAAACT CCACAGCTGC
  CTACTCCTGG GTAGATTTTC ATCACTGAGA GAGGCAGATG AAGAGATTAC CATGGAGGAA
  CCTGAATGGT GAAATCCAGG ATGTGGCCGG AGGCAGTGAC AGGTGGCAGA GGAGGATCAG
  AGCTGGAAGG GGCTGTGTCA ACTAGGTGGC AATGACTAGA CAAGCAGTGA CCTGCTGGGC
  R
  GCTTTCTTAC CCAGTGTAGG CACTGTCCTG ACTCAGGTTC TTATTGTGCC TGGAACCAGC
  TTCTAGCTGG AATGTGGTGA GTTTTACTTC TGCTCTCCAC TAATCTGTGC CTGCATCCCA
  CCATGCCGGT GTCTCAGCCC TCCCCGACGT TTCATTTCAT GTCTCCCTGC ACCAGTCTTG
  CTCCTCCCTG AGAGCAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8780170	WI_WGS_14_66091639	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6374034					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75412402 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr404213	regulatory region 404213	1720 bp upstream
Rr495436	regulatory region 495436	422 bp proximal
Tssr4478	transcription start site region 4478	10 bp downstream
Tssr126621	transcription start site region 126621	within coordinates
Tssr126622	transcription start site region 126622	32 bp upstream
Tssr126623	transcription start site region 126623	1627 bp upstream
Tssr126624	transcription start site region 126624	1671 bp upstream
Tssr126625	transcription start site region 126625	1830 bp upstream
Tssr126626	transcription start site region 126626	1845 bp upstream
Tssr126627	transcription start site region 126627	1861 bp upstream
Tssr129768	transcription start site region 129768	155 bp upstream
Tssr129769	transcription start site region 129769	1618 bp downstream
Tssr129770	transcription start site region 129770	1687 bp downstream