rs6374222 SNP Detail

Summary

• ID
  rs6374222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:58814435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGTTGCA AGAGATACAA
  GTGAGTGAAT GTTAGAGTGG AGGTCAAGCT CTGTTTGGAA TTAATTAAAG ACATGTTTCC
  AAGGCCCCCA AAGTCTCCAG ATATTCTCAT ATTACCTTCT CTATTTTCTA AAACCATAAA
  GGTGCTGAAA GCCAGTTTTA ACACTGAATA GTCACCGTGA TATTGCCAAG TGTCACAATA
  R
  TGCTCCGTGT CAATGTTTCA GCTAGCACAG GTGAAATGCT ACATAAGTTG GCAGTGTTTT
  CATTATATAT CATTTTGTTG TAACTGTTAG ATTCAGTTAG AGAGCTTTCC CTCTCTCCAC
  AAGAGCAGCC TTGGTCTCTC CATTACACCA GCTGGGGAGG AGTGTCTATC ATAATAGGAA
  AGGATGCAGA GGAAACAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8780358	WI_WGS_2_59480543	WI	MOUSE	f	SNP							A		G
ss38058311	NES09330584	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6374222					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38058311	NES09330584	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:58814435 () rs orientation: forward

Symbol	Name	Function Class
Ccdc148	coiled-coil domain containing 148	within coordinates
Gm75104	predicted gene, 75104	within coordinates
Rr373217	regulatory region 373217	396 bp downstream