rs6374600 SNP Detail

Summary

• ID
  rs6374600
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:75412503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCCGGA GGCAGTGACA
  GGTGGCAGAG GAGGATCAGA GCTGGAAGGG GCTGTGTCAA CTAGGTGGCA ATGACTAGAC
  AAGCAGTGAC CTGCTGGGCA GCTTTCTTAC CCAGTGTAGG CACTGTCCTG ACTCAGGTTC
  TTATTGTGCC TGGAACCAGC TTCTAGCTGG AATGTGGTGA GTTTTACTTC TGCTCTCCAC
  W
  AATCTGTGCC TGCATCCCAC CATGCCGGTG TCTCAGCCCT CCCCGACGTT TCATTTCATG
  TCTCCCTGCA CCAGTCTTGC TCCTCCCTGA GAGCAATGCT TCTGCTTCAC TTCTGTCTCA
  GTCTCCAGCG TGGGCAGACA CTCACACACG AGAGGAACCG ACACACGAGT GGTTTTCTCT
  CTTTCTTTTA TAGATTCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8780737	WI_WGS_14_66091740	WI	MOUSE	f	SNP							T		A
ss51533230	NES14628245	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		A		T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6374600					SNP	T	T	T	T	T	T	T	A	A	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533230	NES14628245	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75412503 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	Intron
Rr404213	regulatory region 404213	1619 bp upstream
Rr495436	regulatory region 495436	321 bp proximal
Tssr4478	transcription start site region 4478	111 bp downstream
Tssr126621	transcription start site region 126621	85 bp downstream
Tssr126622	transcription start site region 126622	55 bp downstream
Tssr126623	transcription start site region 126623	1526 bp upstream
Tssr126624	transcription start site region 126624	1570 bp upstream
Tssr126625	transcription start site region 126625	1729 bp upstream
Tssr126626	transcription start site region 126626	1744 bp upstream
Tssr126627	transcription start site region 126627	1760 bp upstream
Tssr129768	transcription start site region 129768	256 bp upstream
Tssr129769	transcription start site region 129769	1517 bp downstream
Tssr129770	transcription start site region 129770	1586 bp downstream