rs6374612 SNP Detail

Summary

• ID
  rs6374612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113097080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACGAAG GCTTCACCTA
  GCTCAGTCTC CATCTCTAAG GGAAGAAACC AAATCTTTGG GTTTCTCTCA CTGATTCTCT
  GAATAGCTCA GGTACATGAC TGACCTTCCA GGGCCTTCTC AGGACTAGTG TTTAACATAG
  GACTTCTGGG TGTAGAAAAG AAACAAGAAT TATCTTGCCT AAGAACCTTA ATATTAGGTA
  Y
  CTAGCTTTAA TTGGCTTTTG ACCTATTTTA TTTTATACAT GTTTGTTAGA AATAGAATTA
  ACTAAGGCAG ATGTTTGTCT ATGGTCTATT TAGGTAATAA AGTCTATAAA ATTTTGTATT
  TTTTTTAATT TGTTTTGTGA CAGGGTCTTC CCATATAGTC CTCCTGGCTG GCCTGAAACT
  TGCTTTGTAG ATCAGATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8780749	WI_WGS_6_114026420	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6374612					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113097080 () rs orientation: forward

Symbol	Name	Function Class
Setd5	SET domain containing 5	within coordinates
Tssr58173	transcription start site region 58173	855 bp upstream