rs6375118 SNP Detail

Summary

• ID
  rs6375118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181941175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC AAAAGGACTC AGAAGAAACA
  Y
  TACTACGGTC ACACTCTTCG ATGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8781258	WI_WGS_1_183511507	WI	MOUSE	f	SNP								T	C
ss49538235	NES12844440	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	T			C	C	C		C	C	T		C
ss146402201	ENSMUSSNP1875623	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss320162406	CHEV_1_184043741	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6375118					SNP	T	T	C	C	T	T	T	T	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538235	NES12844440	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181941175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	227 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	within coordinates
Rr407119	regulatory region 407119	1557 bp distal
Rr424857	regulatory region 424857	1733 bp distal
Rr424858	regulatory region 424858	1595 bp distal
Rr424859	regulatory region 424859	1295 bp distal
Rr424860	regulatory region 424860	within coordinates
Rr424861	regulatory region 424861	431 bp proximal
Rr424862	regulatory region 424862	1535 bp proximal
Rr424863	regulatory region 424863	1799 bp proximal