rs6375127 SNP Detail

Summary

• ID
  rs6375127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121504218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCAACGG GGTCAAGCAA CCATAGATTA ATACCTCTGA
  AACCATGGGC CAAAATAAAC AAACCTTTCC TCTTCTTAAG TTGAATTATC TCAGGTATTT
  R
  TTAGAGTAGT ACAAAGTACC CTAAGACACT TAGTGCCAAA TATTTTAAAG TTTTTTTCTT
  TCTTTTAGGA AAATTAAAAA GAGGTAGAAG AACAGAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8781267	WI_WGS_3_122073101	WI	MOUSE	f	SNP			G	A
ss45527402	mCV23476299	ABI	CRAMUS_MOUSE	f	SNP	G	G	G		A
ss135727224	ENSMUSSNP1712000	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
ss320905033	CHEV_3_121413487	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6375127					SNP	G	G	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121504218 () rs orientation: forward

Symbol	Name	Function Class
D3Mit288	DNA segment, Chr 3, Massachusetts Institute of Technology 288	1730 bp distal
Gm43607	predicted gene 43607	687 bp downstream
Gm43608	predicted gene 43608	323 bp upstream