rs6375134 SNP Detail

Summary

• ID
  rs6375134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181941181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGAGGT CATCATGGTA
  TTCCCAGGAC CCCCACCCCG CCCCCACCCA CTAGTGACAC CTGTTGCTCT GTGTCCTTGC
  TCACCCCTGC TTGGATCAGA AAGCCTGATT GACCATTTCA TACGACGTAC ATTGTCCTTC
  CCTCTAAATT CCAGCTCCTT GGCACAGCCT GTACAAAAGG ACTCAGAAGA AACATTACTA
  Y
  GGTCACACTC TTCGATGCTG GTCCCCTTCT CGAAACCTAA GAAAGCTCTT GCAACCAGGA
  GGATGCTGGG GAGGGGTCCC CTGACCTTTT GGACTGGATG ACCAATGAGC TGACAGCTGT
  GTGCAATCAG GACTCCACAG TCCCCGTTCT CTAGGCCACC CAGAGGGTTT CCACAGCTGA
  GCGGAGCCTG CTGCTGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8781274	WI_WGS_1_183511513	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6375134					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181941181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	233 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	within coordinates
Rr407119	regulatory region 407119	1563 bp distal
Rr424857	regulatory region 424857	1739 bp distal
Rr424858	regulatory region 424858	1601 bp distal
Rr424859	regulatory region 424859	1301 bp distal
Rr424860	regulatory region 424860	within coordinates
Rr424861	regulatory region 424861	425 bp proximal
Rr424862	regulatory region 424862	1529 bp proximal
Rr424863	regulatory region 424863	1793 bp proximal