rs6375185 SNP Detail

Summary

• ID
  rs6375185
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181941211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACCCCG CCCCCACCCA
  CTAGTGACAC CTGTTGCTCT GTGTCCTTGC TCACCCCTGC TTGGATCAGA AAGCCTGATT
  GACCATTTCA TACGACGTAC ATTGTCCTTC CCTCTAAATT CCAGCTCCTT GGCACAGCCT
  GTACAAAAGG ACTCAGAAGA AACATTACTA CGGTCACACT CTTCGATGCT GGTCCCCTTC
  W
  CGAAACCTAA GAAAGCTCTT GCAACCAGGA GGATGCTGGG GAGGGGTCCC CTGACCTTTT
  GGACTGGATG ACCAATGAGC TGACAGCTGT GTGCAATCAG GACTCCACAG TCCCCGTTCT
  CTAGGCCACC CAGAGGGTTT CCACAGCTGA GCGGAGCCTG CTGCTGAGTG GAGATGTCAT
  CTGATTCATT AATTAAAGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8781325	WI_WGS_1_183511543	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6375185					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181941211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	263 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	5 bp downstream
Rr407119	regulatory region 407119	1593 bp distal
Rr424857	regulatory region 424857	1769 bp distal
Rr424858	regulatory region 424858	1631 bp distal
Rr424859	regulatory region 424859	1331 bp distal
Rr424860	regulatory region 424860	within coordinates
Rr424861	regulatory region 424861	395 bp proximal
Rr424862	regulatory region 424862	1499 bp proximal
Rr424863	regulatory region 424863	1763 bp proximal