rs6375367 SNP Detail

Summary

• ID
  rs6375367
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4166475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCTAAG CCCAGCACGG
  AAGAGGGCAG GGGCAAGAAG ACAGCTGGGG CTTATTCCTT TGAATAAGAG ACCTCTCTCA
  TTTCAAGAAT AAAGTGGAGA ATAATCTAGG GGGTTACCCT AACATACTCG AATGCAACAC
  ACTACATGCC TGCTCTAACA CATGCAACAT GGAGATTTTA ATGCCCCTGT AGCCTTGGCT
  W
  GCTCTGAGAC CTTCAGCGAG TCACATCCCC CTGCAACCTA GGTGTCCTTT TGCACACTCA
  GCTCTAAGCT CAAATATGCG TGCTGCAGGC CTGTTAAACA CAAGGCAATG TGGTCATTCT
  TGGGAAAAGT TCGTCATCAG CCTAGGCTCT TACAGAGGGG CTGTTGTTAG GGATCAATGC
  AAAGTAGACT GGAAGAAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8781508	WI_WGS_7_3494780	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6375367					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4166475 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	within coordinates
Gm73056	predicted gene, 73056	376 bp upstream
Rr641923	regulatory region 641923	within coordinates
Rr641924	regulatory region 641924	387 bp proximal
Rr641925	regulatory region 641925	1374 bp proximal
Tssr70452	transcription start site region 70452	771 bp downstream
Tssr70453	transcription start site region 70453	1025 bp downstream
Tssr70454	transcription start site region 70454	1185 bp downstream
Tssr70455	transcription start site region 70455	1208 bp downstream
Tssr70456	transcription start site region 70456	1244 bp downstream
Tssr70457	transcription start site region 70457	1320 bp downstream
Tssr70458	transcription start site region 70458	1550 bp downstream