rs6375445 SNP Detail

Summary

• ID
  rs6375445
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:108778655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA GCCAATGGGA AAGAGTGAAG
  K
  CTTTCCAGTA TAGTGGAGAG GAGTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8781586	WI_WGS_5_106310422	WI	MOUSE	f	SNP						T		G
ss61215753	NES16730254	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G		G		G	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6375445					SNP	T	T	T	T	G	T	G	G	G	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61215753	NES16730254	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108778655 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16204	CpG island 16204			480 bp distal
Gak	cyclin G associated kinase			1034 bp upstream
Rr616724	regulatory region 616724			770 bp distal
Rr616725	regulatory region 616725			177 bp distal
Tmem175	transmembrane protein 175			Intron
				Noncoding-Transcript-Variant
Tssr47844	transcription start site region 47844			913 bp downstream
Tssr47845	transcription start site region 47845			771 bp downstream
Tssr47846	transcription start site region 47846			739 bp downstream
Tssr52443	transcription start site region 52443			1111 bp upstream
Tssr52444	transcription start site region 52444			1082 bp upstream
Tssr52445	transcription start site region 52445			1028 bp upstream