rs6375662 SNP Detail

Summary

• ID
  rs6375662
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130369547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTAATG TCCTACTAAC
  TGAGCACAGT GTTAAATTGC CCCCAAGTCC CTATTTTTAC ACCCATAGAT CAGGAAAGCT
  CTTGGTCCTC TTCAGAGATG CTTAGAAGAT GCATCTAGAT GGTGATTAAC ACTGACTCAC
  AAGTGCCCAG AGTGCAGATA ACGAGAATAA AAGAGATATC TTTATCACAG CCCTTCCTCT
  W
  TGGCCATGTA CGATCTCAGA AGAAGTAGTA GTAAGACTGT AAGAACTAGG GGTTAGTGGA
  GGACATTTGT GAAACTGTGT CTTCTTTGTT AAGTTTTTTT TTAAGAATTT TTTTATTTAC
  ATTTCAAATG TTATCCCCTT TCCTAGTTTC CTCTCTGAAT ATCCTTTATC CCCCTCTCCC
  TCCCACTGTT CACCAACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8781805	WI_WGS_1_131272566	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6375662					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130369547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd55	CD55 molecule, decay accelerating factor for complement			Intron
				Noncoding-Transcript-Variant
Rr417916	regulatory region 417916			1407 bp proximal