rs6375738 SNP Detail

Summary

• ID
  rs6375738
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121504370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTCTTT CTTTTAGGAA AATTAAAAAG AGGTAGAAGA
  ACAGAACAAA ATTCAGGAAG TATGATTCCA AAGAAATATT AAAGAACAGT TAATGCACTC
  S
  ATCTGAAAAT AGGTTTAAAA GCAGCATGTA TCCAAGTTCT TGTACCCATA ATGCATTGCG
  ATGAAGCTAG TAGACAAGGA GGAGGTTGAC AGCTGTCAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8781881	WI_WGS_3_122073253	WI	MOUSE	f	SNP							G		C
ss45560323	mCV23476288	ABI	CRAMUS_MOUSE	f	SNP	G	G					G			C
ss46929903	NES10690330	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		C	G	G		G	G	G		G
ss135727230	ENSMUSSNP1866727	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								C
ss320905035	CHEV_3_121413639	CHEVERUD	SCREENING_POP	f	SNP													G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6375738					SNP	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929903	NES10690330	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121504370 () rs orientation: forward

Symbol	Name	Function Class
D3Mit288	DNA segment, Chr 3, Massachusetts Institute of Technology 288	1882 bp distal
Gm43607	predicted gene 43607	535 bp downstream
Gm43608	predicted gene 43608	475 bp upstream