rs6375861 SNP Detail

Summary

• ID
  rs6375861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:58814754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAGCAG CCTTGGTCTC
  TCCATTACAC CAGCTGGGGA GGAGTGTCTA TCATAATAGG AAAGGATGCA GAGGAAACAG
  AGGACCCTGC CAGGACTGGC AGGTACCATC TCTGAGGGTC TGCTGGCCAA GCCCCACTGT
  GATTTCAAAA TGTTCCTTTT CCCTACCCCC TAAAGCCTTG TAATTGTCAT TATTCTCCTT
  Y
  CTCAACATTG GGGCACTTCA TAGGGATGAG AGGCAATCAG TCACAGGCAT TTGAAGGAAA
  TTGCAGAGGA CACTTCCATA TCCTGAAGTT CCTGTGGTGC ACGAATGCAT GCAGTAGCAA
  TTAAGGGCCT AAAGTAAAGG AGGAAAATTA ATAGGAAGAG AGTTGCTGAG CCCTACTGCA
  GTCAACCAGG ACAAAAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8782005	WI_WGS_2_59480862	WI	MOUSE	f	SNP							T		C
ss38058308	NES09330587	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6375861					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38058308	NES09330587	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:58814754 () rs orientation: forward

Symbol	Name	Function Class
Ccdc148	coiled-coil domain containing 148	within coordinates
Gm75104	predicted gene, 75104	within coordinates
Rr373217	regulatory region 373217	715 bp downstream