rs6375875 SNP Detail

Summary

• ID
  rs6375875
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73931164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACCTACC TGTAACTGCT
  GCAACATCTC CGTCACCCCT TGAACCTAGA GCATTTCACA CAGGGACAGG GGCTCATTGG
  GATGACAATG AATTCCTGGA GAGCAACAGA GAATTCCAGG GTTTCCAGCA CCCAGAGAGG
  AGACTAAAAT AGAATGGGAA ACGTCTTTGT CATTAGACTC CTACTAGATT CCTATGCTGT
  S
  GGAGGTGGAG GAGGCTCCCT AAAGAGGGTG GGGCAGAATA GAGCTTCTAG TTGGAGTCTA
  AGGAGATAGG TCCATAAAAA AAATATTAAA AATTAAAAAA TCAAACTATT TAAGAAAGAC
  AATTCCTAAC TAAAGATGGA AGACGAGGGC TGATCTCAGT TAATATTAAC TTTAAAATCG
  GCCAGGAATA TCCGAGACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8782019	WI_WGS_4_71247608	WI	MOUSE	f	SNP								G		C
ss38190805	NES09620061	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G		G	G	G	C		G	G	C	G
ss146558466	ENSMUSSNP1581351	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G								G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6375875					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190805	NES09620061	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73931164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	333 bp proximal
Frmd3	FERM domain containing 3	515 bp upstream
Rr101135	regulatory region 101135	within coordinates
Tssr37633	transcription start site region 37633	667 bp upstream