rs6375904 SNP Detail

Summary

• ID
  rs6375904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:58814776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTACACCA GCTGGGGAGG
  AGTGTCTATC ATAATAGGAA AGGATGCAGA GGAAACAGAG GACCCTGCCA GGACTGGCAG
  GTACCATCTC TGAGGGTCTG CTGGCCAAGC CCCACTGTGA TTTCAAAATG TTCCTTTTCC
  CTACCCCCTA AAGCCTTGTA ATTGTCATTA TTCTCCTTTC TCAACATTGG GGCACTTCAT
  R
  GGGATGAGAG GCAATCAGTC ACAGGCATTT GAAGGAAATT GCAGAGGACA CTTCCATATC
  CTGAAGTTCC TGTGGTGCAC GAATGCATGC AGTAGCAATT AAGGGCCTAA AGTAAAGGAG
  GAAAATTAAT AGGAAGAGAG TTGCTGAGCC CTACTGCAGT CAACCAGGAC AAAAAGTTTA
  TTTCAAGGCC TTGACTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8782048	WI_WGS_2_59480884	WI	MOUSE	f	SNP	A	G
ss320317957	CHEV_2_58777175	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6375904					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:58814776 () rs orientation: forward

Symbol	Name	Function Class
Ccdc148	coiled-coil domain containing 148	within coordinates
Gm75104	predicted gene, 75104	within coordinates
Rr373217	regulatory region 373217	737 bp downstream