rs6376001 SNP Detail

Summary

• ID
  rs6376001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73931234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCATTGG GATGACAATG
  AATTCCTGGA GAGCAACAGA GAATTCCAGG GTTTCCAGCA CCCAGAGAGG AGACTAAAAT
  AGAATGGGAA ACGTCTTTGT CATTAGACTC CTACTAGATT CCTATGCTGT GGGAGGTGGA
  GGAGGCTCCC TAAAGAGGGT GGGGCAGAAT AGAGCTTCTA GTTGGAGTCT AAGGAGATAG
  R
  TCCATAAAAA AAATATTAAA AATTAAAAAA TCAAACTATT TAAGAAAGAC AATTCCTAAC
  TAAAGATGGA AGACGAGGGC TGATCTCAGT TAATATTAAC TTTAAAATCG GCCAGGAATA
  TCCGAGACTG TTACCACGGT CATGTGCATG TGCAATGTTT GTGCCTCTTG CCATTGTTTG
  ATAATCCCTT CCAGCCCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8782146	WI_WGS_4_71247678	WI	MOUSE	f	SNP		G	A
ss146558470	ENSMUSSNP655048	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6376001					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73931234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	263 bp proximal
Frmd3	FERM domain containing 3	445 bp upstream
Rr101135	regulatory region 101135	within coordinates
Tssr37633	transcription start site region 37633	597 bp upstream