rs6376193 SNP Detail

Summary

• ID
  rs6376193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181941370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATTACT ACGGTCACAC
  TCTTCGATGC TGGTCCCCTT CTCGAAACCT AAGAAAGCTC TTGCAACCAG GAGGATGCTG
  GGGAGGGGTC CCCTGACCTT TTGGACTGGA TGACCAATGA GCTGACAGCT GTGTGCAATC
  AGGACTCCAC AGTCCCCGTT CTCTAGGCCA CCCAGAGGGT TTCCACAGCT GAGCGGAGCC
  Y
  GCTGCTGAGT GGAGATGTCA TCTGATTCAT TAATTAAAGC GAACACTGTT CATCCAGTGC
  TCTGGGGCAT GGTTTAAAAA AAGAACCCAG AACATTTACC ATTTGATAGA AATAGCATTC
  GTCAGCGGGA GAGGTAACTG AAGTTTTACT CTTAGCCCCT TCATTCCAAG AGTACCCCCA
  CCCTGTCCCG GTTCCCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8782338	WI_WGS_1_183511702	WI	MOUSE	f	SNP							T	C
ss49538234	NES12844441	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T			T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6376193					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538234	NES12844441	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181941370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	422 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	164 bp downstream
Rr407119	regulatory region 407119	1752 bp distal
Rr424857	regulatory region 424857	1928 bp distal
Rr424858	regulatory region 424858	1790 bp distal
Rr424859	regulatory region 424859	1490 bp distal
Rr424860	regulatory region 424860	within coordinates
Rr424861	regulatory region 424861	236 bp proximal
Rr424862	regulatory region 424862	1340 bp proximal
Rr424863	regulatory region 424863	1604 bp proximal
Rr424864	regulatory region 424864	1988 bp proximal