rs6376227 SNP Detail

Summary

• ID
  rs6376227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121504429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATGATTCC AAAGAAATAT TAAAGAACAG TTAATGCACT
  CGATCTGAAA ATAGGTTTAA AAGCAGCATG TATCCAAGTT CTTGTACCCA TAATGCATTG
  Y
  GATGAAGCTA GTAGACAAGG AGGAGGTTGA CAGCTGTCAG AGGAGGATCA GCCATGTCTG
  AACATCCAGT CCCACCCAGG GAGGGCTGAG GGCGGGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8782373	WI_WGS_3_122073312	WI	MOUSE	f	SNP									C									T
ss16374921	03.122.177	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	T	C	C	C	T	C	C	T	C	T	T	T	C	C	C	C	T	C	T		C	T	T	C	T	T	C	C	T	T
ss45450894	mCV23476287	ABI	CRAMUS_MOUSE	f	SNP	T		C						C											T
ss46929906	NES10690331	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C							T					T		C			C							C			C				T									T
ss135727233	ENSMUSSNP1261674	ENSEMBL	ENSEMBL_Sanger	f	SNP			C																	T
ss320905036	CHEV_3_121413698	CHEVERUD	SCREENING_POP	f	SNP																										C																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6376227					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	T	C	C	C	T	C	C	T	C	T	T	T	C	C	C	C	T	C	T	T	C	T	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929906	NES10690331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121504429 () rs orientation: forward

Symbol	Name	Function Class
D3Mit288	DNA segment, Chr 3, Massachusetts Institute of Technology 288	1941 bp distal
Gm43607	predicted gene 43607	476 bp downstream
Gm43608	predicted gene 43608	534 bp upstream