rs6376323 SNP Detail

Summary

• ID
  rs6376323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4166599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCGAATG CAACACACTA
  CATGCCTGCT CTAACACATG CAACATGGAG ATTTTAATGC CCCTGTAGCC TTGGCTTGCT
  CTGAGACCTT CAGCGAGTCA CATCCCCCTG CAACCTAGGT GTCCTTTTGC ACACTCAGCT
  CTAAGCTCAA ATATGCGTGC TGCAGGCCTG TTAAACACAA GGCAATGTGG TCATTCTTGG
  R
  AAAAGTTCGT CATCAGCCTA GGCTCTTACA GAGGGGCTGT TGTTAGGGAT CAATGCAAAG
  TAGACTGGAA GAAAGCAGGC AACCCAGCCC GCCCTGACAG ACACATGCTC AGATAAGCAC
  ATCCTCTCTG GCCTCTTCCA CCCTCTTTTT CCTGCCTAAG TACCGCGTGG CTCCAGCTGC
  AGGGATGGGG GTGGGGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	FVB/NJ	LG/J	PWD/PhJ	SM/J
ss8782469	WI_WGS_7_3494904	WI	MOUSE	f	SNP		G	A
ss51877922	NES14896783	PERLEGEN	MM_PANEL2	f	SNP	G			G		A
ss322093637	CHEV_7_4115202	CHEVERUD	SCREENING_POP	f	SNP					A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	FVB/NJ	LG/J	PWD/PhJ	SM/J
rs6376323					SNP	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51877922	NES14896783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4166599 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	within coordinates
Gm73056	predicted gene, 73056	252 bp upstream
Rr641923	regulatory region 641923	within coordinates
Rr641924	regulatory region 641924	263 bp proximal
Rr641925	regulatory region 641925	1250 bp proximal
Tssr70452	transcription start site region 70452	647 bp downstream
Tssr70453	transcription start site region 70453	901 bp downstream
Tssr70454	transcription start site region 70454	1061 bp downstream
Tssr70455	transcription start site region 70455	1084 bp downstream
Tssr70456	transcription start site region 70456	1120 bp downstream
Tssr70457	transcription start site region 70457	1196 bp downstream
Tssr70458	transcription start site region 70458	1426 bp downstream