rs6376504 SNP Detail

Summary

• ID
  rs6376504
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108778834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT GCAGGTAACT TTATGTTATT
  W
  CTGGAATGAA GTTGAAGGGA TTTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8782653	WI_WGS_5_106310601	WI	MOUSE	f	SNP							A		T
ss61215751	NES16730256	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T		T		A	T	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6376504					SNP	A	A	A	A	A	T	A	T	T	A	T	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61215751	NES16730256	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108778834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	659 bp distal
Gak	cyclin G associated kinase	1213 bp upstream
Rr616724	regulatory region 616724	949 bp distal
Rr616725	regulatory region 616725	356 bp distal
Tmem175	transmembrane protein 175	within coordinates
Tssr47844	transcription start site region 47844	1092 bp downstream
Tssr47845	transcription start site region 47845	950 bp downstream
Tssr47846	transcription start site region 47846	918 bp downstream
Tssr52443	transcription start site region 52443	1290 bp upstream
Tssr52444	transcription start site region 52444	1261 bp upstream
Tssr52445	transcription start site region 52445	1207 bp upstream