rs6376521 SNP Detail

Summary

• ID
  rs6376521
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30805200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATCTCT ACATGACCCC
  GAGCGCCCAT TTTACAAACC GGGAGGCCAA GAGGCTGGGA GCGTACGCTG CAGAAGTACA
  GGGCTCGCTC AGCATGCATG AGACACTAGC ACTACAAAAA GAAAAGGAAG CCGAGCAATG
  GAAAAGAAAA GAAAATCTGG TAGCCTTGGC CCGGGACCCT GCACTCTGCT TCTCCAGCTC
  K
  CCTACCAAAG ACCGGTGGCA GCTCCGGGGC GGGGCTAGCG GGCGTGGGGC GTGGGCCAGT
  GGGGTCATGT GACTCCCGGC CCGGAAGTTC TTGAGTAGGA GACTCCACAT CCCGGGTGAC
  CCGGGTTGGA GCTGCTGATT CAAGTGGTCT CTCGTGTCCA CCACTATGGC CTGGACTAAG
  TACCAGTTGT TCCTGGCCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8782670	WI_WGS_5_29307247	WI	MOUSE	f	SNP		T	G
ss148186587	ENSMUSSNP1358254	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6376521					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30805200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	within coordinates
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	562 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	562 bp distal
Mir5625	microRNA 5625	80 bp upstream
Rr609028	regulatory region 609028	within coordinates
Rr609029	regulatory region 609029	1745 bp proximal
Slc35f6	solute carrier family 35, member F6	77 bp upstream
Tssr45603	transcription start site region 45603	65 bp upstream
Tssr45604	transcription start site region 45604	79 bp upstream
Tssr45605	transcription start site region 45605	149 bp upstream