rs6376902 SNP Detail

Summary

• ID
  rs6376902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34098457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGGGCT CCTTTTATCC
  AAGTCCTCAG TCTCCATTTC TGTTAATAGA GTTCAGAATT GTAAAAGGGG GGCAAGTAGG
  AACCATTCTG ATTACAAAGT GGATTTGGAG ATCATAGACT TGATTCTGCC CACAAACACC
  CTCATTTTTA AAATGTTAGG GATGAAGTAA TTGTTTTGTC TGTTTGTTTG TGTCTGTGGC
  R
  GTGGGATTTA GCCATTACAC TATAAAATTA GAAGCAACAT TAGGGTCTTC TAGCATGCAT
  TGATCTGTAT ATCATTGTTG CCTAATTTTT TTTTTTTTCT GCTGTGGACG AGTTACAGTT
  TCAATAAAGA CTATATGACC CATACATCCT AAAATATTTT CTGTCTAGTT CTGTAGAGAA
  AAACCAGGTC AAGTTTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8783052	WI_WGS_15_34201847	WI	MOUSE	f	SNP			G	A
ss147537710	ENSMUSSNP6250269	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6376902					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34098457 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Rr500667	regulatory region 500667	1092 bp distal
Tssr131017	transcription start site region 131017	1197 bp upstream
Tssr133963	transcription start site region 133963	1205 bp downstream