rs6377091 SNP Detail

Summary

• ID
  rs6377091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30805338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTCTTGAGTA GGAGACTCCA CATCCCGGGT GACCCGGGTT GGAGCTGCTG
  R
  TTCAAGTGGT CTCTCGTGTC CACCACTATG GCCTGGACTA AGTACCAGTT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss8783241	WI_WGS_5_29307385	WI	MOUSE	f	SNP							A	G
ss47672347	NES10263151	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A			A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs6377091					SNP	G	A	G	A	G	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47672347	NES10263151	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30805338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	within coordinates
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	700 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	700 bp distal
Mir5625	microRNA 5625	within coordinates
Rr609028	regulatory region 609028	43 bp distal
Rr609029	regulatory region 609029	1607 bp proximal
Slc35f6	solute carrier family 35, member F6	within coordinates
Tssr45603	transcription start site region 45603	62 bp downstream
Tssr45604	transcription start site region 45604	within coordinates
Tssr45605	transcription start site region 45605	11 bp upstream