rs6377100 SNP Detail

Summary

• ID
  rs6377100
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51624724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGCACA GAAAGCTGCT
  ATAGAAATTG TCCTGTAAGC CTGATAAGGT CAGATCTCCA CCCATTTGGG CTTCTCTGAC
  AGCTCTTTGC ATCAAAGGTT TACTATCGTG GCAGATTTAC CAACATTTTG GGTACAAAGG
  GCTAACATTT GACCAAATCT GAACCTTTGA GACTCTTGAA CCCTGTGTCT GCAAATCAGC
  S
  ATGCCCGAAC AAACACGCAA CAAACCCACA GTTACCATTA TCAATGTTAA CAATAGATTC
  ATGAAATACT AATAAACAGA CTTTTAAGAA TACCATTTGG CAAAATTGTT GGTGTTTATC
  AAAGTGTAAG AAGGAACCAG CTGGGGCTGG AGAGATGGCT CAGTGGTTAA GAACACTGAC
  TGCTCTTCCA GAGGTCCTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8783250	WI_WGS_1_52144435	WI	MOUSE	f	SNP							C		G
ss47349911	NES11071033	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6377100					SNP	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47349911	NES11071033	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51624724 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	within coordinates
Rr366895	regulatory region 366895	392 bp downstream
Tssr6632	transcription start site region 6632	178 bp downstream
Tssr6633	transcription start site region 6633	127 bp downstream
Tssr11575	transcription start site region 11575	574 bp upstream
Tssr11576	transcription start site region 11576	298 bp upstream