rs6377289 SNP Detail

Summary

• ID
  rs6377289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40287941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGCAGT ACCCAAGCAA
  AGCACCGCCA GCCACTTCCG CCCATTTAAA GACACAGCAC ATGTTTTGTC CCAGAATGGG
  ACAGATCACC AGGGATGACA GGGATCGGTG TGCTGCACTT GGGGAATGCG GTACCAGGAA
  GGAAGAGGCA AGGGGCGGAA AAACTCAGCA GAGGGAGAGA GTCACAGGCC CCCAACCATA
  Y
  TACCCAGGTG AGTTAATCGG TCACACAGTT GGCAGGGAAG GGGTCCTGAA CAACCTCAGG
  ATTCCTCAGC TGAGCATACC TGAAAATCCT AGCTAGTGGA TGGCTGCTCA AGACCACCTT
  AAGTAGAACT GTCCTCTGTT CCTGATGGAG CAAGCTGGGG TAGCCAGCAG GCTCTGAGCT
  CCCAAGCAGT TAGTTCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8783439	WI_WGS_9_40572183	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6377289					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40287941 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	235 bp distal
Rr676806	regulatory region 676806	367 bp distal
Rr676807	regulatory region 676807	316 bp distal
Rr676808	regulatory region 676808	within coordinates
Tssr88904	transcription start site region 88904	506 bp upstream
Tssr88905	transcription start site region 88905	382 bp upstream
Tssr88906	transcription start site region 88906	287 bp upstream
Tssr88907	transcription start site region 88907	230 bp upstream
Tssr88908	transcription start site region 88908	201 bp upstream
Tssr88909	transcription start site region 88909	185 bp downstream