rs6377314 SNP Detail

Summary

• ID
  rs6377314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93306110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGGAAA CTCTTCAAAC
  TTGCATCTAG AAAGTAGAGA CCAGGACTGT TGGGCATTCA AGGCAGTGCC AATTCTTAGA
  GAAGATGCCC TCGGGATATC TCCCCCTCCT TCCTAACCCT CCCACCTCTC TCTCTCAGCC
  CACCCTCACC TCCAGCTACC CCTAGCCTTG CACCTTGAAC TTCTCTAATC CTGCTTCCAT
  Y
  TCTCAAGTGA TTAGAGTCTC CCAGGTTTCT GTGGTGCTGG GGATGGAGCC AGGACTTACT
  GTGTGCATGG CAGGCAAGCA CTCTGCTGGT GGAACCCCAC CCCAGCACCA AGTCCGGCTT
  CTCAAGAGGC ACCCAGAGCT ACAGGGATAA AGGGTATGGG CCCCTGAACC TCTCTCACCT
  CTGTTCCTGA GCCTTCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8783464	WI_WGS_2_94454878	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6377314					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93306110 () rs orientation: forward

Symbol	Name	Function Class
Rr561215	regulatory region 561215	73 bp distal
Rr561216	regulatory region 561216	558 bp distal
Rr561217	regulatory region 561217	816 bp proximal
Rr561218	regulatory region 561218	1720 bp proximal
Rr561219	regulatory region 561219	1975 bp proximal