rs6377368 SNP Detail

Summary

• ID
  rs6377368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34098555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATTTGG AGATCATAGA
  CTTGATTCTG CCCACAAACA CCCTCATTTT TAAAATGTTA GGGATGAAGT AATTGTTTTG
  TCTGTTTGTT TGTGTCTGTG GCGGTGGGAT TTAGCCATTA CACTATAAAA TTAGAAGCAA
  CATTAGGGTC TTCTAGCATG CATTGATCTG TATATCATTG TTGCCTAATT TTTTTTTTTT
  Y
  CTGCTGTGGA CGAGTTACAG TTTCAATAAA GACTATATGA CCCATACATC CTAAAATATT
  TTCTGTCTAG TTCTGTAGAG AAAAACCAGG TCAAGTTTGC TTCCCAGTAC TTGGGAGGGG
  TGGGGGGGGA CAGAGTCAGG TGAATCTGAG TTCTAGACCA GCCAGAGCTG AACAGAGAAA
  ATCCGTCTCA AAACAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8783518	WI_WGS_15_34201945	WI	MOUSE	f	SNP			T	C
ss147537714	ENSMUSSNP5886627	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6377368					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34098555 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Rr500667	regulatory region 500667	1190 bp distal
Tssr131017	transcription start site region 131017	1099 bp upstream
Tssr133963	transcription start site region 133963	1107 bp downstream