rs6377424 SNP Detail

Summary

• ID
  rs6377424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163185595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGCCGAT GGGCAGATAA GCTTGCCCAA CATGCGCTTA
  ATTATACAAA CAAGTCTTTC TGGAGAAAGT CTTCAGACAA TTACCTCCCG AAATAAATAT
  R
  CCCCAGCGAC TGTCAATAGC AATAAAACCC ACACAATCAT TTCTTAAAGC TTTTATTGTT
  TGCCTGTAAT TAGCATGTTG ATGTGATTAA AGCTACATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8783574	WI_WGS_1_164547097	WI	MOUSE	f	SNP								A		G
ss44951963	mCV23470620	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A			G
ss49730851	NES13050427	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A		G	A	A	G	A	A	G	A
ss145957036	ENSMUSSNP666595	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6377424					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49730851	NES13050427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163185595 () rs orientation: forward

Symbol	Name	Function Class
Rr846	regulatory region 846	within coordinates
Rr422079	regulatory region 422079	1442 bp distal
Rr422080	regulatory region 422080	142 bp proximal
Tssr9725	transcription start site region 9725	356 bp upstream