rs6377747 SNP Detail

Summary

• ID
  rs6377747
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40287959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA TATTACCCAG GTGAGTTAAT
  M
  GGTCACACAG TTGGCAGGGA AGGGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss8783897	WI_WGS_9_40572201	WI	MOUSE	f	SNP							C	A
ss50677881	NES13999652	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C			C		A	C		C
ss322915614	CHEV_9_40184248	CHEVERUD	SCREENING_POP	f	SNP										A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs6377747					SNP	C	C	C	C	C	C	C	A	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677881	NES13999652	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40287959 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	253 bp distal
Rr676806	regulatory region 676806	385 bp distal
Rr676807	regulatory region 676807	334 bp distal
Rr676808	regulatory region 676808	within coordinates
Tssr88904	transcription start site region 88904	524 bp upstream
Tssr88905	transcription start site region 88905	400 bp upstream
Tssr88906	transcription start site region 88906	305 bp upstream
Tssr88907	transcription start site region 88907	248 bp upstream
Tssr88908	transcription start site region 88908	219 bp upstream
Tssr88909	transcription start site region 88909	167 bp downstream