rs6377764 SNP Detail

Summary

• ID
  rs6377764
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43857545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTCCAA AGCATTCAAA
  CATGAGCAGT TTCAATTCAT TTCTCTTTCA TCGTTTTCAA GAATTACTAA CATTTACCCA
  TTTCAGTGTC TTTTCCTCCT CCCCACTCCT TTGTCGTCAT TAATTGACCT TTACTCTGTA
  TCTAAGCATT AATTAACCTT TACTTCATAT CTAAGCATGA ATTTTATATT GCAAGCCAAG
  K
  GATTATATCT AGCCAGGCAC CTCCTATTCG TACTTTGCCC AGGCCAGCAG CAGATATGCC
  ATTACAGAAA TGAAAGATAC TCAAGCTCTG TCAACAGACT GTCTTTAACA GTATATTGTT
  ATATTGTTAT TGGTTTTATA TTTTTGATGT CAGCAGAGAG TATGATAGCC TATCTAGAAT
  AATATTTTTC AGGTATAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8783914	WI_WGS_18_43883350	WI	MOUSE	f	SNP		G		T
ss49295163	NES12688957	PERLEGEN	MM_PANEL2	f	SNP	G		T		G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6377764					SNP	G	G	T	T	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295163	NES12688957	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43857545 () rs orientation: forward

Symbol	Name	Function Class
Rr348914	regulatory region 348914	655 bp proximal
Rr393629	regulatory region 393629	125 bp upstream