rs6377866 SNP Detail

Summary

• ID
  rs6377866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137046829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAAGCT CTCTGGCCCT
  TTCTCAAGAA GGGTCTCTTC CTGTTCAAAT CCCATCCTGA CCTTTTTGTT GAAGAAGAGT
  AAAATAATGC AGTAACAAAA ACACAAGTGG CTGCCAAAGG AAGAGAGAGG AAAAAAAAAG
  AAGTTCCTGT AAGGGGCTGA AACAATAAAT CTCCTCTCTG CTGACCTCCC AAAGGGAGTG
  Y
  GTGTATTTCC TCTAGTTCTT TATCAGAATC CCCAAAATAA GTAGGAATGG GCAGCGTCTG
  CTCACAGTCA GTACACCTTT CCCATTTGCT AATACGGCCT GGCCAGGCTG AGAGGAATCC
  TTCCCTGCCT TACCCTGGAC AGTGAAGCCA CTGAGACCAT CGGTAGGCAC CATGCGGCTG
  CTTCAAGCGA CTGTTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8784016	WI_WGS_3_137837053	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6377866					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137046829 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	mRNA-UTR
Rr585936	regulatory region 585936	within coordinates
Tssr31897	transcription start site region 31897	22 bp downstream
Tssr31898	transcription start site region 31898	8 bp upstream
Tssr31899	transcription start site region 31899	35 bp upstream
Tssr31900	transcription start site region 31900	79 bp upstream
Tssr31901	transcription start site region 31901	111 bp upstream
Tssr31902	transcription start site region 31902	144 bp upstream