rs6378179 SNP Detail

Summary

• ID
  rs6378179
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100820354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GCAGTGATTC GGTGCTTAAA
  W
  CCCACACAGG GAGCATTCAC ATCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss8784330	WI_WGS_5_98218126	WI	MOUSE	f	SNP			A	T
ss148928098	ENSMUSSNP1055182	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T			T		T
ss321627402	CHEV_5_101101507	CHEVERUD	SCREENING_POP	f	SNP						T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs6378179					SNP	A	T	A	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100820354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Cpgi16113	CpG island 16113			1219 bp proximal
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			773 bp distal
Rr615538	regulatory region 615538			879 bp distal
Rr615539	regulatory region 615539			within coordinates
Rr615540	regulatory region 615540			935 bp proximal
Rr615541	regulatory region 615541			1766 bp proximal
Rr615542	regulatory region 615542			1786 bp proximal
Tssr52113	transcription start site region 52113			1742 bp downstream