rs6378251 SNP Detail

Summary

• ID
  rs6378251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88864058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCATACTGT ATTCTACCTC TCGACTGGAG GTGGCCAGCA
  GCCAGCAGCC AGCAGCAGCC ATCCCTGAGG AGAAAGGAAC AAAGCTAGAA CAGGGCGTCC
  R
  TAGGGGATGA TTCCCTCTGG GATGATAGGG CCTGCTACAG GCAGGACTGG TCGGGAACAG
  CAGGCTCTGG AGTGAATGGT GTGGTTCCTG AGTGTCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8784402	WI_WGS_11_89715112	WI	MOUSE	f	SNP	G	A
ss323783383	CHEV_11_88834546	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6378251					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88864058 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	230 bp downstream
Coil	coilin	703 bp upstream
Cpgi3523	CpG island 3523	514 bp proximal
Gm10367	predicted gene 10367	within coordinates
Rr237596	regulatory region 237596	1658 bp distal
Rr247482	regulatory region 247482	142 bp proximal
Tssr104059	transcription start site region 104059	687 bp upstream
Tssr104060	transcription start site region 104060	696 bp upstream