rs6378340 SNP Detail

Summary

• ID
  rs6378340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40288078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAAGAG GCAAGGGGCG
  GAAAAACTCA GCAGAGGGAG AGAGTCACAG GCCCCCAACC ATATTACCCA GGTGAGTTAA
  TCGGTCACAC AGTTGGCAGG GAAGGGGTCC TGAACAACCT CAGGATTCCT CAGCTGAGCA
  TACCTGAAAA TCCTAGCTAG TGGATGGCTG CTCAAGACCA CCTTAAGTAG AACTGTCCTC
  Y
  GTTCCTGATG GAGCAAGCTG GGGTAGCCAG CAGGCTCTGA GCTCCCAAGC AGTTAGTTCT
  GAGCACAGAG AACTCACAGT TCTCTTCCCC TACCGGGGAC ATTGCCCACA TGACCAGGGC
  ATGTGGTGAG CAGCTCTGAG TGGCAAAGCA GGCTTTCAGT CACCTGAAGT CAGGAATCCT
  GTCAAGGTGG CCCCAGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8784491	WI_WGS_9_40572320	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6378340					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40288078 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	372 bp distal
Rr676806	regulatory region 676806	504 bp distal
Rr676807	regulatory region 676807	453 bp distal
Rr676808	regulatory region 676808	within coordinates
Tssr88904	transcription start site region 88904	643 bp upstream
Tssr88905	transcription start site region 88905	519 bp upstream
Tssr88906	transcription start site region 88906	424 bp upstream
Tssr88907	transcription start site region 88907	367 bp upstream
Tssr88908	transcription start site region 88908	338 bp upstream
Tssr88909	transcription start site region 88909	48 bp downstream