rs6378359 SNP Detail

Summary

• ID
  rs6378359
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88864123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GACTGGTCGG GAACAGCAGG
  S
  TCTGGAGTGA ATGGTGTGGT TCCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8784510	WI_WGS_11_89715177	WI	MOUSE	f	SNP	C	G
ss323783384	CHEV_11_88834611	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6378359					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88864123 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	295 bp downstream
Coil	coilin	638 bp upstream
Cpgi3523	CpG island 3523	449 bp proximal
Gm10367	predicted gene 10367	within coordinates
Rr237596	regulatory region 237596	1723 bp distal
Rr247482	regulatory region 247482	77 bp proximal
Tssr104059	transcription start site region 104059	622 bp upstream
Tssr104060	transcription start site region 104060	631 bp upstream