rs6378380 SNP Detail

Summary

• ID
  rs6378380
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43857678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTATCT AAGCATTAAT
  TAACCTTTAC TTCATATCTA AGCATGAATT TTATATTGCA AGCCAAGGGA TTATATCTAG
  CCAGGCACCT CCTATTCGTA CTTTGCCCAG GCCAGCAGCA GATATGCCAT TACAGAAATG
  AAAGATACTC AAGCTCTGTC AACAGACTGT CTTTAACAGT ATATTGTTAT ATTGTTATTG
  S
  TTTTATATTT TTGATGTCAG CAGAGAGTAT GATAGCCTAT CTAGAATAAT ATTTTTCAGG
  TATAGGTATA ATTTCTATGG CCTATATGTT ACTTTTGTAT GAGCAGCATT TTTGGTCCTC
  TTCTTCATAT ATCCTCAGAA TGATAATGAT TAATATCTAA ATCTTAACTG CTGGGACCAA
  GTCTATTCTT CCTGGACGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8784531	WI_WGS_18_43883483	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6378380					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43857678 () rs orientation: forward

Symbol	Name	Function Class
Rr393629	regulatory region 393629	within coordinates