rs6378412 SNP Detail

Summary

• ID
  rs6378412
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117112731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCCATG ACAAAGTTTA
  CTGCAGCAGA GTAAGAGCTT AACAGCTGGT AATGAATTAT TAAATTCAAT AAATTAAAAT
  AACTAAAATC TAAATACTGG AAAATAAGAA TGCAAATAGA AGCAAGGTGA AACTGATGGC
  AGACATGGTC CTCAGTGACT AGGGAGTGTG TGGTATTCAC AGTGTGGGTA CCATGGAGAA
  K
  GTTATGTGCT AGACAGAACA GGGCAGAACA TAGGGGTTTC CACACATGGG ATAGGATAGG
  AAATTCTCAC AGAACCAATG GCATTTTTCA TTCTATGTCT TCACAACATG GTTAATGGTG
  AGTAAGCGGC TCAAAGGGCT AACCTAGCAA GTAAATAAAT ATATATCATA AATAAATGTA
  AAATTGGTAA CTGATAGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8784563	WI_WGS_10_117511807	WI	MOUSE	f	SNP	T	G
ss323495155	CHEV_10_116713882	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6378412					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117112731 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	715 bp downstream
Rr439488	regulatory region 439488	928 bp distal
Tssr95904	transcription start site region 95904	503 bp upstream
Tssr95905	transcription start site region 95905	559 bp upstream
Tssr95906	transcription start site region 95906	621 bp upstream
Tssr95907	transcription start site region 95907	638 bp upstream
Tssr95908	transcription start site region 95908	814 bp upstream
Tssr95909	transcription start site region 95909	890 bp upstream
Tssr95910	transcription start site region 95910	1025 bp upstream
Tssr95911	transcription start site region 95911	1155 bp upstream
Tssr95912	transcription start site region 95912	1250 bp upstream
Tssr95913	transcription start site region 95913	1310 bp upstream
Tssr99410	transcription start site region 99410	604 bp downstream
Tssr99411	transcription start site region 99411	656 bp downstream
Tssr99412	transcription start site region 99412	777 bp downstream
Tssr99413	transcription start site region 99413	838 bp downstream
Tssr99414	transcription start site region 99414	927 bp downstream
Tssr99415	transcription start site region 99415	1010 bp downstream
Tssr99416	transcription start site region 99416	1060 bp downstream
Tssr99417	transcription start site region 99417	1172 bp downstream
Tssr99418	transcription start site region 99418	1186 bp downstream
Tssr99419	transcription start site region 99419	1201 bp downstream
Tssr99420	transcription start site region 99420	1273 bp downstream
Tssr99421	transcription start site region 99421	1347 bp downstream