rs6378804 SNP Detail

Summary

• ID
  rs6378804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43857713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAAGCAT GAATTTTATA
  TTGCAAGCCA AGGGATTATA TCTAGCCAGG CACCTCCTAT TCGTACTTTG CCCAGGCCAG
  CAGCAGATAT GCCATTACAG AAATGAAAGA TACTCAAGCT CTGTCAACAG ACTGTCTTTA
  ACAGTATATT GTTATATTGT TATTGGTTTT ATATTTTTGA TGTCAGCAGA GAGTATGATA
  R
  CCTATCTAGA ATAATATTTT TCAGGTATAG GTATAATTTC TATGGCCTAT ATGTTACTTT
  TGTATGAGCA GCATTTTTGG TCCTCTTCTT CATATATCCT CAGAATGATA ATGATTAATA
  TCTAAATCTT AACTGCTGGG ACCAAGTCTA TTCTTCCTGG ACGTATCTAC TTGTACTTTT
  ACCTCCAAAG GGACTGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	MOLF/EiJ	WSB/EiJ
ss8784955	WI_WGS_18_43883518	WI	MOUSE	f	SNP		G	A
ss49295162	NES12688958	PERLEGEN	MM_PANEL2	f	SNP	G			A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	MOLF/EiJ	WSB/EiJ
rs6378804					SNP	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295162	NES12688958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43857713 () rs orientation: forward

Symbol	Name	Function Class
Rr348914	regulatory region 348914	487 bp proximal
Rr393629	regulatory region 393629	within coordinates