rs6378856 SNP Detail

Summary

• ID
  rs6378856
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40288172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAC TCACAGTTCT CTTCCCCTAC
  M
  GGGGACATTG CCCACATGAC CAGGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8785007	WI_WGS_9_40572414	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6378856					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40288172 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	466 bp distal
Rr676806	regulatory region 676806	598 bp distal
Rr676807	regulatory region 676807	547 bp distal
Rr676808	regulatory region 676808	40 bp distal
Tssr88904	transcription start site region 88904	737 bp upstream
Tssr88905	transcription start site region 88905	613 bp upstream
Tssr88906	transcription start site region 88906	518 bp upstream
Tssr88907	transcription start site region 88907	461 bp upstream
Tssr88908	transcription start site region 88908	432 bp upstream
Tssr88909	transcription start site region 88909	29 bp upstream